Bioinformatics guide for INFIMM

Omics analysis, single cell RNA-seq, image analysis, using high performance computer (HPC) and more.

Single cell RNA-seq

• QC | valiDrops - automated data QC for Single cell RNA-seq analysis with valiDrops

RNA-seq

• TODO - RNA-seq - mapping

R

• R - using renv to manage R packages in a project

Image data

• Prof. Wolfgang Huber’s Working with Image Data in R
  • as well as his book Modern Statistics for Modern Biology

Computerome

• VS Code - Running a modern IDE on Computerome
• R - Running a powerful RStudio server on Computerome
• Disk Quota exceeded