Package index

All functions

autoplot()

Autoplot a tsd object

combined_seasonal_output()

Compute seasonal onset and burden levels from seasonal time series observations.

consecutive_growth_warnings()

Create a tsd_growth_warning object to count consecutive significant observations

epi_calendar()

Determine Epidemiological Season

fit_growth_rate()

Fit a growth rate model to time series observations.

fit_percentiles()

Fits weighted observations to distribution and returns percentiles

generate_seasonal_data()

Generate Simulated Data of Seasonal Waves as a tsd object

historical_summary()

Summarises estimates like seasonal peak and onset from all available seasons

plot(<tsd>) plot(<tsd_onset>) plot(<tsd_onset_and_burden>) plot(<tsd_growth_warning>)

Create a complete 'ggplot' appropriate to a particular data type

predict(<tsd_onset>)

Predict Observations for Future Time Steps

seasonal_burden_levels()

Compute burden levels from seasonal time series observations of current season.

seasonal_onset()

Automated and Early Detection of Seasonal Epidemic Onset

summary(<tsd_burden_levels>)

Summary method for tsd_burden_levels objects

summary(<tsd_onset>)

Summary method for tsd_onset objects

to_time_series()

Create a tibble-like tsd (time-series data) object from observed data and corresponding dates.